XmlmmCIF equivalent: struct_ref
Data items in the STRUCT_REF category allow the author of a
data block to relate the entities or biological units
described in that data block to information archived in external
databases.
For references to the sequence of a polymer, the value of
the data item _struct_ref.seq_align is used to indicate
whether the correspondence between the sequence of the entity
or biological unit in the data block and the sequence in the
referenced database entry is 'complete' or 'partial'. If
this value is 'partial', the region (or regions) of the
alignment may be delimited using data items in the
STRUCT_REF_SEQ category.
Also for references to the sequence of a polymer, the value of
_struct_ref.seq_dif is used to indicate whether or not the
two sequences contain point differences. If the value is yes,
the differences may be identified and annotated using data
items in the STRUCT_REF_SEQ_DIF category.
XmlmmCIF equivalent: struct_ref/biol_id
This data item is a pointer to _struct_biol.id in the
STRUCT_BIOL category.
XmlmmCIF equivalent: struct_ref/db_code
The code for this entity or biological unit or for a closely
related entity or biological unit in the named database.
XmlmmCIF equivalent: struct_ref/db_name
The name of the database containing reference information about
this entity or biological unit.
XmlmmCIF equivalent: struct_ref/details
A description of special aspects of the relationship between
the entity or biological unit described in the data block and
the referenced database entry.
XmlmmCIF equivalent: struct_ref/entity_id
This data item is a pointer to _entity.id in the ENTITY category.
XmlmmCIF equivalent: struct_ref/pdbx_align_begin
Beginning index in the chemical sequence from the
reference database.
XmlmmCIF equivalent: struct_ref/pdbx_db_accession
Accession code of the reference database.
XmlmmCIF equivalent: struct_ref/pdbx_seq_one_letter_code
Database chemical sequence expressed as string of one-letter
amino acid codes.
XmlmmCIF equivalent: struct_ref/seq_align
A flag to indicate the scope of the alignment between the
sequence of the entity or biological unit described in the data
block and the referenced database entry. 'entire' indicates
that alignment spans the entire length of both sequences
(although point differences may occur, and can be annotated
using the data items in the STRUCT_REF_SEQ_DIF category).
'partial' indicates a partial alignment, and the region (or
regions) of the alignment may be delimited using data items
in the STRUCT_REF_SEQ category. This data item may also take
the value '.', indicating that the reference is not to a
sequence.
XmlmmCIF equivalent: struct_ref/seq_dif
A flag to indicate the presence ('yes') or absence ('no') of
point differences between the sequence of the entity or
biological unit described in the data block and the referenced
database entry. This data item may also take the value '.',
indicating that the reference is not to a sequence.
XmlmmCIF equivalent: struct_ref/id
The value of _struct_ref.id must uniquely identify a record
in the STRUCT_REF list.
Note that this item need not be a number; it can be any unique
identifier.